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Division of Endocrinology and Department of Medicine, North Shore University Hospital/New York University School of Medicine, Manhasset 11030; and Department of Cell Biology, New York University School of Medicine, New York, New York 10021
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ABSTRACT |
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We developed an RT-PCR assay to study
both the time course and the mechanism for the triiodothyronine
(T3)-induced transcription of the
- and
-myosin heavy
chain (MHC) genes in vivo on the basis of the quantity of specific
heterogeneous nuclear RNA (hnRNA). The temporal relationship of changes
in transcriptional activity to the amount of
-MHC mRNA and the
coordinated regulation of transcription of more than one gene in
response to T3 are demonstrated here for the first time.
Quantitation of
-MHC hnRNA demonstrated that T3 induced
-MHC transcription in hypothyroid rats within 30 min of a single
injection of T3 (0.5 µg/100 g body wt). Maximal transcription rates (135% ± 15.8 of euthyroid values) occurred 6 h after injection and subsequently declined in parallel with serum
T3 levels. The transcription of
-MHC was reduced to 86% of peak hypothyroid levels 6 h after a single T3
injection and reached a nadir of 59% of hypothyroid levels at 36 h. Analysis of the time course of T3-mediated induction of
-MHC hnRNA and repression of
-MHC hnRNA indicates that separate
molecular mechanisms are involved in the coordinated regulation of
these genes.
cardiac contractility; heterogeneous nuclear ribonucleic acid; thyroid hormone; thyroid disease
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INTRODUCTION |
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THYROID HORMONE
EXERTS profound effects on the heart and cardiovascular system
(19). Many of the cardiac effects of triiodothyronine (T3), the biologically active form of the hormone, are
mediated at the level of gene transcription. After transport to the
myocyte nucleus, T3 binds to thyroid hormone nuclear
receptors (TRs), which in turn bind to T3 response elements
located within the 5' flanking regions of T3-responsive
genes (5, 9, 12). TRs act in a bimodal fashion by
activating transcription in the presence of T3 by
recruiting coactivator complexes and repressing transcription in the
absence of ligand by recruiting corepressor complexes (15, 24,
39). Two distinct genes encode the family of TRs, and in the
mammalian heart two splice variants of the TR
gene, TR
-1 and
TR
-2, and primarily one splice variant of the TR
gene, TR
1,
are expressed (14, 23, 35). There are multiple
T3-regulated cardiac-specific genes including
-myosin heavy chain (MHC),
-MHC, phospholamban (PLB), and sarcoplasmic reticulum Ca2+-ATPase (SERCA2) (19, 28, 36).
Hypothyroidism results in decreased expression of positively regulated
T3-responsive cardiac genes such as
-MHC and SERCA2, whereas the expression of negatively regulated
T3-responsive genes such as
-MHC and PLB is increased
(9, 16, 28). The shift in cardiac phenotype of rodents
with hypothyroidism determines in large part the decrease in both
systolic and diastolic contractile function (1, 9, 14).
Treatment with thyroid hormone restores the normal expression of these
genes, increases cardiac mass, and improves contractile function
(3, 7, 18, 22, 38). The kinetics of gene activation and
repression in the heart have not been fully investigated (9, 19,
28). Various lines of evidence have suggested that the cardiac
response to T3 treatment results from changes in the rate
of transcription of cardiac-specific genes, including nuclear run-on
assays for
-and
-MHC expression performed on nuclei isolated from
euthyroid rat hearts (4, 9, 17, 29). However, experiments
were not designed to specifically measure the effects of T3
treatment (4). Direct gene transfer of an
-MHC
promoter/luciferase reporter plasmid into hearts of hypothyroid rats
demonstrated thyroid hormone regulation of
-MHC expression as
measured by reporter gene activity (17, 30). Those
measurements of
-MHC promoter activity required injection of a
recombinant plasmid into the ventricular tissue and quantitation of
luciferase activity several processing steps downstream from transcription (30), thereby precluding studies of the
initial transcriptional response to thyroid hormone. Although nuclear run-on studies and direct gene transfer with
-MHC
promoter/luciferase reporter plasmids have demonstrated a
transcriptional mechanism for thyroid hormone regulation of
-MHC
expression, these studies are not technologically capable of
demonstrating the kinetics of
-MHC induction by T3 or
the coordinated expression of two thyroid hormone-responsive genes as
we report here.
Although it has been demonstrated that
-MHC mRNA content increases
in the hypothyroid cardiac myocyte in response to thyroid hormone
(3, 28), the temporal relationship of changes in transcriptional activity to the amount of
-MHC mRNA or of the coordinated regulation of transcription of more than one gene in
response to T3 have not been established. We have developed a novel RT-PCR-based assay that requires small amounts of RNA and can
be used to test for the transcriptional regulation of multiple genes at
multiple time points. We used this assay to simultaneously determine
the transcription rate of the
- and
-MHC genes in response to
T3 in hypothyroid animals. This study was designed to
investigate the coordinated transcriptional response of the cardiac
myocyte to T3 administration in vivo to further identify
the role of gene transcription and the mechanisms involved in this
process over an entire physiological range of serum T3 concentrations.
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MATERIALS AND METHODS |
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Animal protocols.
Adult male Sprague-Dawley rats (4-6 wk of age) were obtained from
Taconic Farms (Germantown, NY). Animals were rendered hypothyroid by
surgical thyroidectomy (Tx). Seven days after surgery, hypothyroidism was confirmed by analysis of serum total T3 levels by RIA
(Diasorin, Stillwater, MN). Rats were given a single intramuscular
injection of 1 µg of T3 (ICN Biomedicals, Aurora, OH) in
0.2 ml of PBS and were killed 0.5, 2, 6, 12, 24, 36, 48, and 72 h
after injection. Hearts were quickly excised and weighed, and left
ventricles (LVs) including septum were rapidly frozen in liquid
nitrogen and stored at
80°C until being extracted for RNA. Three
animals were used for each time point. RNA purified from four euthyroid
animals was pooled and used as the reference sample in the RT-PCR
analysis. The investigation conformed to the Guide for the Care
and Use of Laboratory Animals published by the National Institutes
of Health (NIH Publication No. 85-23, Revised 1985).
Total RNA isolation. Total RNA was extracted from frozen LV samples as we described previously (3). The integrity of RNA was confirmed by electrophoretic resolution of the RNA and visualization of the ribosomal RNA subunits by ethidium bromide intercalation (3).
RT-PCR-based transcription assay of heterogeneous nuclear RNA.
The current report demonstrates the measurement of transcription by
quantitation of the primary transcript. The first product of
transcription is the primary transcript, or heterogeneous nuclear RNA
(hnRNA), which includes introns as well as exons. Total RNA from the hearts of experimental animals was used in a reverse transcription reaction with a primer that annealed to a sequence within
an intron, therefore amplifying only the hnRNA (10). Treatment with DNase I ensured that no amplification of the cardiac genomic DNA occurred. The RT-PCR protocol is outlined in Fig. 1. Fifty micrograms of total RNA was
treated with DNase I and the RNeasy mini protocol for RNA Cleanup
(Qiagen, Valencia, CA). RNA concentration was determined
spectrophotometrically. RT-PCR was performed with 2 µg of total LV
RNA and reverse primers that annealed to the first intron of the
-MHC gene (
-MHC-949R: 5'-GACACAGAAA- GAAAGGAAGGAT-3'; GenBank
accession no. AH002207; Ref. 25) and to the first intron
of the
-MHC gene (
-MHC-1456R: 5'-ACACACGCGCA CACACTAGCA-3';
GenBank accession no. X16291). These primers amplified only
- or
-MHC hnRNA. Separate RT reactions were done with the
-MHC reverse
primer and the intronic reverse primer for
-actin hnRNA
(
-actin-492R: 5'-GGAATACGACTGCAAAC ACTC-3'; GenBank accession no.
V01217; Ref. 28). Reactions were then set up that
contained both reverse primers with
-actin hnRNA as an internal
control for each sample. The individual reactions ensured that reverse
transcription reactions with both reverse primers accurately amplified
both
-MHC and
-actin hnRNA fragments. RNA and 25 pmol of reverse
primer (36-µl volume) were annealed in a 65°C water bath for 5 min
and then allowed to cool at room temperature for 20 min. Reactions were
centrifuged briefly, and 5× RT reaction buffer, 1 µl of Moloney
murine leukemia virus RT (Promega, Madison, WI), 1 µl of RNasin
(Promega), and dNTPs (Amersham Pharmacia, Piscataway, NJ; final
concentration of 1 mM each) were added for a total reaction volume of
50 µl. Reactions were incubated for 60 min at 37°C and stopped at
94°C for 6 min.
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-MHC by PCR with the reverse
primer (
-MHC-949R) and a forward primer that annealed to the first
exon (
-MHC-614F: 5'-ATTTCTCCATCCCAAGTAAG-3'; Ref. 25).
Amplification of a 312-bp fragment of
-MHC was done with the reverse
primer (
-MHC-1456R) and a forward primer that annealed to sequences
within exon 1 (
-MHC1144F: 5'-TGAGCATTCTCCTGCTGTTTC-3'). PCR
amplification of
-actin hnRNA was done with the reverse primer (
-actin-492R) and a forward primer that annealed to exon 1 (
-actin-254F: 5'-CACTGTCGAGTCCGCGTCCAC-3'), amplifying a fragment of
238 bp. PCR was performed with 10× buffer including 15 mM
MgCl2, 0.5 µl (2.5 U) Amplitaq Gold enzyme (Perkin Elmer,
Foster City, CA), and dNTPs (0.1 mM final concentration each) in a
total volume of 50 µl. After an initial activation step at 94°C for
10 min, amplification was done with 30 cycles: melting step at 94°C
for 45 s, annealing at 55°C for 1 min, and extension at 72°C
for 1 min. Ten microliters of the PCR reaction product was run on a 2%
agarose gel with ethidium bromide and quantitated by densitometry with
BioRad Quantity 4.2.2 software. All RT reactions were done in
duplicate. PCR products were sequenced with an ABI prism 3100 Genetic
Analyzer (Applied Biosystems/Hitachi).
Validation of RT-PCR assay.
We determined the optimum PCR cycle number for the hnRNA content in the
LV samples. PCR products after 15, 20, 25, 30, 35, and 40 reaction
cycles were resolved by electrophoresis and quantified. Plotting PCR
product content vs. cycle number showed that a cycle number of 30 fell
within the linear range of amplification and was therefore chosen for
subsequent analyses (Fig. 2). One, two, and three micrograms of total LV RNA from euthyroid and hypothyroid rats were assayed for hnRNA. hnRNA levels in hypothyroid animals were
low to undetectable in 1, 2, or 3 µg RNA. In contrast, the concentration of
-MHC hnRNA from euthyroid animals increased linearly with an increase of total RNA used in the RT reaction as shown
in Fig. 3. To maintain linearity of the
assay, 2 µg of total LV RNA was subsequently used in each RT
reaction. Because the primary transcript (hnRNA) is identical in
sequence to the DNA, we routinely use DNase treatment of RNA samples to
ensure that no DNA is amplified by PCR. To further demonstrate that the DNase treatment was complete, additional control RT-PCR reactions were
performed on total RNA that was not DNase treated as well as RNA
samples that were RNase treated to demonstrate that only the specific
hnRNA was the template for the amplification reaction.
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-MHC mRNA or protein was assayed.
RT-PCR reactions using primers specific for
-MHC hnRNA showed no
product in both EDL and soleus muscle RNA (Fig.
4).
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Real-time quantitative PCR.
-MHC hnRNA was also quantitated by real-time PCR with the ABI PRISM
7700 (Perkin Elmer Life Sciences), and results were analyzed with the
accompanying software. First-strand synthesis was performed with RT-PCR
as described in RT-PCR-based transcription assay of heterogeneous
nuclear RNA with 0.5 µg of total RNA and 37.5 pmol of reverse
primer. The primer-probe set for
-MHC hnRNA was as follows:
-MHC R (5'-AAGTCGCCCTCCCTCCC-3') annealed within the second intron,
-MHC F (5'-GCAAGGTCACTGCCGAAACT-3') annealed within the second exon
(also the first translated region), and the
-MHC probe
(5'-AAAACGGCAAGGTATGTGCAATGGTGG-3') labeled with TET/TAMRA extended
across the intron/exon boundary. The primer-probe set for GAPDH
mRNA was as follows: GAPDH R (5'-GGCCTCTCTCTTGCTCTCAGTATC-3'), GAPDH F
(5'-GGCCTACATGGCCTCCAA-3'), and GAPDH probe (TET/TAMRA) (5'-AGTAAGAAACCCCTGGACCACCCAGC-3'). The real-time PCR cycle used was
50°C (2 min), 95°C (10 min), followed by 45 cycles of 95°C (30 s)
and 60°C (1 min).
Amplification of fully processed
-MHC mRNA by RT-PCR.
A reverse primer that annealed to the 3' untranslated sequence of
-MHC, a region that differs from
-MHC (
-MHC-5892R:
5'-GTGGGATAGCAACAGCGAGGC-3') was used as described in
RT-PCR-based transcription assay of heterogeneous nuclear
RNA with 2 or 100 ng of total RNA from each animal. PCR with the
same reverse primer and forward primer (
-MHC-5593F: 5'-CTACCAGACAGAGGAAGACAAG-3') amplified a region 299 bp in length (27). The PCR reactions were as described above but were
run for 25 cycles, which we determined to be within the linear range.
Statistical analysis. All data are expressed as means ± SE. Statistical differences between values were evaluated by Student's t-test with significant probability at P < 0.05.
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RESULTS |
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Cardiac mass and thyroid status. Compared with the euthyroid control animals with a heart weight-to-body weight ratio (HW/BW, mg/g) of 3.42 ± 0.16, the hypothyroid animals had a 26% reduction in HW/BW to 2.52 ± 0.05, similar to that previously described (3). This difference in ratio was the result of a significant decrease in total cardiac and LV mass in the hypothyroid rats. Total heart weight for euthyroid animals was 705 ± 32 mg vs. 507 ± 10 mg for hypothyroid animals (P < 0.01). LV mass was 520 ± 25 and 400 ± 5 mg for euthyroid and hypothyroid animals, respectively (P < 0.01). After injection of 1 µg of T3, there was no significant change in absolute heart weight or HW/BW at any of the time points studied (3).
Serum total T3 levels were determined at 8 days after thyroidectomy (Tx), at time 0 and at the times indicated after T3 treatment. All Tx animals were determined to be chemically hypothyroid, with T3 levels <20 ng/dl (29). The range of normal serum T3 levels in euthyroid control animals was between 80 and 120 ng/dl (29). After treatment with 1 µg T3, serum T3 levels appeared to peak within 30 min at 493 ± 20 ng/dl and fell to <50 ng/dl by 24 h (Fig. 5). The half-life of T3 in vivo was determined to be 7 h after T3 treatment (Fig. 5, inset), similar to that previously published by Goslings et al. (13).
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Measurement of
-MHC hnRNA.
The content of hnRNA in 2 µg of purified total LV RNA was measured
for each animal at the indicated time points after T3
injection. The amount of the 335-bp PCR fragment of MHC hnRNA was
determined by densitometry and expressed in arbitrary densitometric units.
-MHC hnRNA expression after
T3 treatment are shown in a typical gel illustrating
results from the indicated time points in Fig.
6A and quantitated in Fig. 6B. The transcription of
-MHC is initiated as early as 30 min after a single injection of T3, with a significant rise
in the level of
-MHC hnRNA (P < 0.05 vs. time
0) to a level that was 17 ± 3% of the euthyroid standard.
The maximum content of hnRNA was reached at 6 h after injection,
to a level of 135 ± 16% of euthyroid (Fig. 6). The content of
-MHC hnRNA had declined to 42% of peak levels by 36 h after
treatment (simultaneous serum T3 = 25 ng/dl) and
continued to decline almost linearly at 48 and 72 h.
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-actin,
a non-T3-responsive gene, as an internal control. Primer sets for
-MHC and
-actin hnRNA were assayed together for
euthyroid, 6 h after T3, and hypothyroid RNA samples.
These time points represent the lowest and highest levels of
-MHC
detected. Although
-actin hnRNA levels did not change, expression of
-MHC hnRNA in each of these samples with both primer sets was the
same as that observed with a single primer set. A representative gel is
shown in Fig. 7.
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-MHC hnRNA.
-MHC hnRNA
content is expressed as the fold difference between a given sample and
hypothyroid levels and was calculated after normalization to GAPDH.
GAPDH cycle number for all samples submitted for analysis was
24.97 ± 0.22, confirming that GAPDH is a
non-T3-responsive gene. As shown in Fig.
8, quantitative analysis of
-MHC hnRNA by real-time PCR concurs with the results of the transcription assay
described in Figs. 6 and 7.
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-MHC hnRNA demonstrated relative
concentrations of 27.5 units/2 µg nuclear RNA and 2.25 units/2 µg
total RNA. This corresponds to an ~12-fold increase in the amount of
euthyroid
-MHC hnRNA from nuclear RNA compared with total cellular
RNA, similar to expected results, because ~14% of the total cellular
RNA is found in the nucleus at any given time including all of the
hnRNA and a small percentage of the processed mRNA. As a result, the
concentration of any hnRNA species will be at least sevenfold higher in
purified nuclear RNA than in total cellular RNA.
Measurement of
-MHC hnRNA.
The content of
-MHC hnRNA in total LV RNA was measured at the
indicated time points and compared with hypothyroid samples, which were
used as a standard maximum. The results of the time course of
-MHC
hnRNA expression after T3 treatment are shown in Fig.
9. The first measurable decrease in
-MHC expression of 14 ± 2% was detected at 6 h after
injection (P < 0.05). The levels continued to decline
in response to a single injection of T3 and reached a nadir
of 59 ± 2% of pretreatment levels at 36 h. By 72 h
after T3 treatment, when serum T3 levels had
fallen to <20 ng/dl (Fig. 5),
-MHC hnRNA expression had returned to
levels not different from those at time 0 (95 ± 7% of
hypothyroid).
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Determination of fully processed
-MHC mRNA accumulation.
To determine that the hnRNA analysis was predictive of changes in
mature mRNA, we measured the cellular accumulation of fully processed
-MHC mRNA in LV tissue in the RT-PCR assay as described. Negligible amounts of fully processed, mature
-MHC mRNA were detected in Tx animals. After injection of T3, mature
-MHC mRNA was first detected at 30 min, with peak levels
accumulating by 24 h and thereafter declining (Fig.
10).
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DISCUSSION |
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Although prior studies suggested that T3 acts at the
cardiac myocyte nucleus to directly regulate specific gene
transcription, definitive evidence for this premise has not been
established because this requires a direct measure of transcriptional
activity (17, 30, 33). The use of reporter genes to study
transcription has inherent shortcomings due to the latent period of
reporter protein accumulation, thus making it impossible to study the
kinetics of
-MHC induction by T3 with this methodology.
In addition, the coordinated expression of two thyroid
hormone-responsive genes has not been demonstrated previously.
Therefore, we developed an RT-PCR-based assay of hnRNA content to
quantitate the rate of appearance of myocyte-specific primary gene
transcripts. This assay for both
- and
-MHC hnRNA was determined
to be sensitive, reliable, reproducible, and specific for myocyte gene expression.
The initiation of
-MHC transcription in the hearts of hypothyroid
animals was evident by 30 min after a single T3 dose and suggests that T3 was taken up by cardiac myocytes in
parallel with the rise in serum T3 (11). This
observation is the earliest in vivo cardiac-specific nuclear event
reported to date (33). Repression of
-MHC transcription
was first detectable at 6 h after injection, still 86 ± 2%
of hypothyroid levels, at a time when
-MHC transcription was fully activated.
An increase in the accumulation of fully processed mature
-MHC mRNA
was first detectable at 30 min after T3 injection with a
sensitive RT-PCR assay of 100 ng of total RNA. The accumulation of mRNA
peaked at 24 h and then began to decline as the serum T3 levels and transcription began to fall. Analysis of the
rate of decline of
-MHC hnRNA and mRNA indicated apparent half-lives of ~20 and 14 h, respectively. Although there are inherent
limitations in establishing a half-life for hnRNA or mRNA in vivo as
problems exist in calculating an "absolute" half-life because of
complications such as RNA stability and incomplete cessation of
transcription, cell culture experiments can only approximate what
occurs in vivo.
The temporal relationship between the T3-mediated induction
of
-MHC and repression of
-MHC transcription appears to be
separate and distinct. The sequence of events involved in the induction of the positively regulated
-MHC is a two-step process involving recruitment of coactivators including proteins in the thyroid hormone-associated protein (TRAP) and nuclear receptor coactivator (NCoA) families subsequent to recruitment of histone acetyl
transferases that remodel chromatin (24, 39). The present
data show that this process of induction is initiated within minutes.
In contrast, the molecular events involved in the repression of
-MHC
are less well understood (15, 29, 37). The first
measurable decline in the transcription of
-MHC was not evident
until 6 h after administration of T3, when
-MHC
hnRNA levels were already maximal. The difference in response time for
each gene suggests that different molecular mechanisms are at work
(39). The repression of
-MHC transcription likely
requires the recruitment of multiple coregulators/corepressors, such as
nuclear receptor corepressor (NCoR) and histone deacetylases (HDACs),
that may act at some site other than directly on the 5' region of the
-MHC promoter (31, 37). Additional experiments are
necessary to elucidate the molecular mechanisms involved in
-MHC
regulation by T3.
This is the first demonstration of the temporal association between
serum T3 level,
-MHC gene transcription, and mature mRNA content in the cardiac myocyte (33, 34). These in vivo
animal data provide support for recent human studies in which the
cardiac effects of T3 are seen rapidly after hormone
administration (6, 20).
In summary, these studies emphasize that both positively and negatively
T3-mediated cardiac-specific gene transcription are sensitive to changes in serum levels of T3 over the entire
range of thyroid function; however, the T3-mediated
repression of
-MHC transcription is a slower, more complex process
than the induction of
-MHC. These studies further support the
concept that the cardiac phenotype is regulated rapidly by
T3 at the level of gene transcription (2, 8,
19).
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ACKNOWLEDGEMENTS |
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This work was supported by National Heart, Lung, and Blood Institute Grants HL-58849 to I. Klein and HL-56804 to K. Ojamaa and American Heart Association Fellowship Grant 0120171T to S. Danzi.
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FOOTNOTES |
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Address for reprint requests and other correspondence: I. Klein, North Shore University Hospital, 300 Community Dr., Manhasset, NY 11030 (E-mail: iklein{at}nshs.edu).
The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
First published February 27, 2003;10.1152/ajpheart.00860.2002
Received 3 October 2002; accepted in final form 17 February 2003.
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