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Articles in PresS, published online ahead of print January 3, 2002
Am J Physiol Heart Circ Physiol, 10.1152/ajpheart.00875.2001
Submitted on October 10, 2001
Accepted on December 21, 2001
1 Medicine, University of Rochester Medical Center, Rochester, New York, USA
2 Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA
3 Blood Center of Southeastern Wisconsin, Milwaukee, Wisconsin, USA
4 Human Cancer Genetics, Ohio State University, Columbus, Ohio, USA
5 Lawrence Livermore National Laboratory, Livermore, California, USA
* To whom correspondence should be addressed. E-mail: joseph_miano{at}urmc.rochester.edu.
Defining regulatory elements governing cell-restricted gene expression can be difficult since cis-elements may reside tens of kilobases away from start sites of transcription. Artificial chromosomes, which harbor hundreds of kilobases of genomic DNA, preserve a large sequence landscape containing most, if not all, regulatory elements controlling the expression of a particular gene. Here, we report on the use of a bacterial artificial chromosome (BAC) to begin understanding the in vivo regulation of smooth muscle calponin (SM-Calp). Long and accurate polymerase chain reaction (PCR), sequencing, and in silico analyses facilitated the complete sequence annotation of a BAC harboring human SM-Calp (hSM-Calp). RNase protection, in situ hybridization, Western blotting, and immunohistochemistry assays showed the BAC clone faithfully expressed hSM-Calp in both cultured cells and transgenic mice. Moreover, expression of hSM-Calp mirrored that of endogenous mouse SM-Calp suggesting that all cis-regulatory elements governing hSM-Calp expression in vivo were contained within the BAC. These BAC mice represent a new model system in which to systematically assess regulatory elements governing SM-Calp transcription in vivo.
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